Case Based Surveillance Implementation Guide
0.2.1 - ci-build
Case Based Surveillance Implementation Guide - Local Development build (v0.2.1). See the Directory of published versions
@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
a fhir:Bundle;
fhir:nodeRole fhir:treeRoot;
fhir:Resource.id [ fhir:value "HAICA-TC-Document"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/cbs-document-bundle";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/cbs-document-bundle> ]
];
fhir:Bundle.identifier [
fhir:Identifier.type [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://cbsig.chai.gatech.edu/CodeSystem/cbs-temp-code-system" ];
fhir:Coding.code [ fhir:value "Local-Record-ID" ];
fhir:Coding.display [ fhir:value "Local Record ID" ] ];
fhir:CodeableConcept.text [ fhir:value "Local Record ID" ] ];
fhir:Identifier.system [ fhir:value "urn:temp:national-reporting-jurisdiction:48" ];
fhir:Identifier.value [ fhir:value "C_auris_02" ]
];
fhir:Bundle.type [ fhir:value "document"];
fhir:Bundle.timestamp [ fhir:value "2018-11-26T00:00:00Z"^^xsd:dateTime];
fhir:Bundle.entry [
fhir:index 0;
fhir:Bundle.entry.fullUrl [ fhir:value "Composition/HAICA-TC-Composition" ];
fhir:Bundle.entry.resource <Composition/HAICA-TC-Composition>
], [
fhir:index 1;
fhir:Bundle.entry.fullUrl [ fhir:value "Patient/HAICA-TC-Patient" ];
fhir:Bundle.entry.resource <Patient/HAICA-TC-Patient>
], [
fhir:index 2;
fhir:Bundle.entry.fullUrl [ fhir:value "Condition/HAICA-TC-Condition" ];
fhir:Bundle.entry.resource <Condition/HAICA-TC-Condition>
], [
fhir:index 3;
fhir:Bundle.entry.fullUrl [ fhir:value "Encounter/HAICA-TC-Hospitalization" ];
fhir:Bundle.entry.resource <Encounter/HAICA-TC-Hospitalization>
], [
fhir:index 4;
fhir:Bundle.entry.fullUrl [ fhir:value "Organization/HAICA-TC-Reporting-Source" ];
fhir:Bundle.entry.resource <Organization/HAICA-TC-Reporting-Source>
], [
fhir:index 5;
fhir:Bundle.entry.fullUrl [ fhir:value "Observation/HAICA-TC-CNP" ];
fhir:Bundle.entry.resource <Observation/HAICA-TC-CNP>
], [
fhir:index 6;
fhir:Bundle.entry.fullUrl [ fhir:value "Observation/HAICA-TC-MMWR" ];
fhir:Bundle.entry.resource <Observation/HAICA-TC-MMWR>
], [
fhir:index 7;
fhir:Bundle.entry.fullUrl [ fhir:value "Observation/HAICA-TC-CNP-Member1" ];
fhir:Bundle.entry.resource <Observation/HAICA-TC-CNP-Member1>
], [
fhir:index 8;
fhir:Bundle.entry.fullUrl [ fhir:value "Observation/HAICA-TC-CNP-Member2" ];
fhir:Bundle.entry.resource <Observation/HAICA-TC-CNP-Member2>
], [
fhir:index 9;
fhir:Bundle.entry.fullUrl [ fhir:value "Observation/HAICA-TC-CNP-Member3" ];
fhir:Bundle.entry.resource <Observation/HAICA-TC-CNP-Member3>
], [
fhir:index 10;
fhir:Bundle.entry.fullUrl [ fhir:value "Observation/HAICA-TC-CNP-Member4" ];
fhir:Bundle.entry.resource <Observation/HAICA-TC-CNP-Member4>
], [
fhir:index 11;
fhir:Bundle.entry.fullUrl [ fhir:value "Observation/HAICA-TC-CNP-Member5" ];
fhir:Bundle.entry.resource <Observation/HAICA-TC-CNP-Member5>
], [
fhir:index 12;
fhir:Bundle.entry.fullUrl [ fhir:value "Observation/HAICA-TC-CNP-Member6" ];
fhir:Bundle.entry.resource <Observation/HAICA-TC-CNP-Member6>
], [
fhir:index 13;
fhir:Bundle.entry.fullUrl [ fhir:value "Specimen/HAICA-TC-Specimen" ];
fhir:Bundle.entry.resource <Specimen/HAICA-TC-Specimen>
], [
fhir:index 14;
fhir:Bundle.entry.fullUrl [ fhir:value "DiagnosticReport/HAICA-TC-Lab-DiagnosticReport" ];
fhir:Bundle.entry.resource <DiagnosticReport/HAICA-TC-Lab-DiagnosticReport>
], [
fhir:index 15;
fhir:Bundle.entry.fullUrl [ fhir:value "Observation/HAICA-TC-Lab-Observation" ];
fhir:Bundle.entry.resource <Observation/HAICA-TC-Lab-Observation>
].
<Composition/HAICA-TC-Composition> a fhir:Composition;
fhir:Resource.id [ fhir:value "HAICA-TC-Composition"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/cbs-composition";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/cbs-composition> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-Composition\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-composition.html\">Case Based Surveillance Composition Profile</a></p></div><p><b>status</b>: final</p><p><b>type</b>: Public health Case report <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#55751-2)</span></p><p><b>date</b>: 2018-11-26</p><p><b>author</b>: <a href=\"#Organization_HAICA-TC-Reporting-Source\">See above (Organization/HAICA-TC-Reporting-Source)</a></p><p><b>title</b>: Case Based Surveillance Composition</p></div>"
];
fhir:Composition.status [ fhir:value "final"];
fhir:Composition.type [
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:55751-2;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "55751-2" ] ]
];
fhir:Composition.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ]
];
fhir:Composition.date [ fhir:value "2018-11-26"^^xsd:date];
fhir:Composition.author [
fhir:index 0;
fhir:Reference.reference [ fhir:value "Organization/HAICA-TC-Reporting-Source" ]
];
fhir:Composition.title [ fhir:value "Case Based Surveillance Composition"];
fhir:Composition.section [
fhir:index 0;
fhir:Composition.section.title [ fhir:value "Condition of Interest" ];
fhir:Composition.section.entry [
fhir:index 0;
fhir:Reference.reference [ fhir:value "Condition/HAICA-TC-Condition" ] ]
], [
fhir:index 1;
fhir:Composition.section.title [ fhir:value "Case Notification Panel" ];
fhir:Composition.section.entry [
fhir:index 0;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-CNP" ] ];
fhir:Composition.section.section [
fhir:index 0;
fhir:Composition.section.entry [
fhir:index 0;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-MMWR" ] ], [
fhir:index 1;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-CNP-Member1" ] ], [
fhir:index 2;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-CNP-Member2" ] ], [
fhir:index 3;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-CNP-Member3" ] ], [
fhir:index 4;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-CNP-Member4" ] ], [
fhir:index 5;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-CNP-Member5" ] ], [
fhir:index 6;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-CNP-Member6" ] ] ]
], [
fhir:index 2;
fhir:Composition.section.title [ fhir:value "History of Encounters (Hospitalizations)" ];
fhir:Composition.section.entry [
fhir:index 0;
fhir:Reference.reference [ fhir:value "Encounter/HAICA-TC-Hospitalization" ] ]
], [
fhir:index 3;
fhir:Composition.section.title [ fhir:value "Reporting Entities" ];
fhir:Composition.section.entry [
fhir:index 0;
fhir:Reference.reference [ fhir:value "Organization/HAICA-TC-Reporting-Source" ] ]
], [
fhir:index 4;
fhir:Composition.section.title [ fhir:value "Laboratory Related Resources" ];
fhir:Composition.section.entry [
fhir:index 0;
fhir:Reference.reference [ fhir:value "DiagnosticReport/HAICA-TC-Lab-DiagnosticReport" ] ], [
fhir:index 1;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-Lab-Observation" ] ], [
fhir:index 2;
fhir:Reference.reference [ fhir:value "Specimen/HAICA-TC-Specimen" ] ]
].
<Patient/HAICA-TC-Patient> a fhir:Patient;
fhir:Resource.id [ fhir:value "HAICA-TC-Patient"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-patient";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-patient> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "extensions" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-Patient\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-us-cbs-patient.html\">US Case Based Surveillance Patient Profile</a></p></div><blockquote><p><b>US Core Race Extension</b></p><p><b>value</b>: White (Details: urn:oid:2.16.840.1.113883.6.238 code 2106-3 = 'White', stated as 'White')</p><p><b>value</b>: Mixed</p></blockquote><blockquote><p><b>US Core Ethnicity Extension</b></p><p><b>value</b>: Hispanic or Latino (Details: urn:oid:2.16.840.1.113883.6.238 code 2135-2 = 'Hispanic or Latino', stated as 'Hispanic or Latino')</p><p><b>value</b>: Hispanic or Latino</p></blockquote><p><b>US Core Birth Sex Extension</b>: F</p><p><b>Birth Place</b>: USA </p><p><b>genderIdentity</b>: female <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://hl7.org/fhir/R4/codesystem-gender-identity.html\">Gender identity</a>#female)</span></p><p><b>identifier</b>: Local Record ID: C_auris_02, Local Subject ID: C_auris_PAT_02</p><p><b>name</b>: </p><p><b>telecom</b>: </p><p><b style=\"color: maroon\">Exception generating Narrative: Cannot invoke \"String.startsWith(String)\" because the return value of \"org.hl7.fhir.r5.model.ContactPoint.getValue()\" is null</b></p></div>"
];
fhir:DomainResource.extension [
fhir:index 0;
fhir:Element.extension [
fhir:index 0;
fhir:Extension.url [ fhir:value "ombCategory" ];
fhir:Extension.valueCoding [
fhir:Coding.system [ fhir:value "urn:oid:2.16.840.1.113883.6.238" ];
fhir:Coding.code [ fhir:value "2106-3" ];
fhir:Coding.display [ fhir:value "White" ] ] ], [
fhir:index 1;
fhir:Extension.url [ fhir:value "text" ];
fhir:Extension.valueString [ fhir:value "Mixed" ] ];
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race" ]
], [
fhir:index 1;
fhir:Element.extension [
fhir:index 0;
fhir:Extension.url [ fhir:value "ombCategory" ];
fhir:Extension.valueCoding [
fhir:Coding.system [ fhir:value "urn:oid:2.16.840.1.113883.6.238" ];
fhir:Coding.code [ fhir:value "2135-2" ];
fhir:Coding.display [ fhir:value "Hispanic or Latino" ] ] ], [
fhir:index 1;
fhir:Extension.url [ fhir:value "text" ];
fhir:Extension.valueString [ fhir:value "Hispanic or Latino" ] ];
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity" ]
], [
fhir:index 2;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex" ];
fhir:Extension.valueCode [ fhir:value "F" ]
], [
fhir:index 3;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/patient-birthPlace" ];
fhir:Extension.valueAddress [
fhir:Address.country [ fhir:value "USA" ] ]
], [
fhir:index 4;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/patient-genderIdentity" ];
fhir:Extension.valueCodeableConcept [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://hl7.org/fhir/gender-identity" ];
fhir:Coding.code [ fhir:value "female" ] ] ]
];
fhir:Patient.identifier [
fhir:index 0;
fhir:Identifier.type [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://cbsig.chai.gatech.edu/CodeSystem/cbs-temp-code-system" ];
fhir:Coding.code [ fhir:value "Local-Record-ID" ];
fhir:Coding.display [ fhir:value "Local Record ID" ] ];
fhir:CodeableConcept.text [ fhir:value "Local Record ID" ] ];
fhir:Identifier.system [ fhir:value "urn:temp:national-reporting-jurisdiction:48" ];
fhir:Identifier.value [ fhir:value "C_auris_02" ]
], [
fhir:index 1;
fhir:Identifier.type [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://cbsig.chai.gatech.edu/CodeSystem/cbs-temp-code-system" ];
fhir:Coding.code [ fhir:value "Local-Subject-ID" ];
fhir:Coding.display [ fhir:value "Local Subject ID" ] ];
fhir:CodeableConcept.text [ fhir:value "Local Subject ID" ] ];
fhir:Identifier.system [ fhir:value "urn:temp:national-reporting-jurisdiction:48" ];
fhir:Identifier.value [ fhir:value "C_auris_PAT_02" ]
];
fhir:Patient.name [
fhir:index 0;
fhir:Element.extension [
fhir:index 0;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/data-absent-reason" ];
fhir:Extension.valueCode [ fhir:value "masked" ] ]
];
fhir:Patient.telecom [
fhir:index 0;
fhir:ContactPoint.system [ fhir:value "phone" ];
fhir:ContactPoint.value [
fhir:Element.extension [
fhir:index 0;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/data-absent-reason" ];
fhir:Extension.valueCode [ fhir:value "masked" ] ] ]
], [
fhir:index 1;
fhir:ContactPoint.system [ fhir:value "email" ];
fhir:ContactPoint.value [
fhir:Element.extension [
fhir:index 0;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/data-absent-reason" ];
fhir:Extension.valueCode [ fhir:value "masked" ] ] ]
];
fhir:Patient.gender [ fhir:value "female"];
fhir:Patient.birthDate [ fhir:value "1940-01-01"^^xsd:date];
fhir:Patient.address [
fhir:index 0;
fhir:Address.use [ fhir:value "home" ];
fhir:Address.district [ fhir:value "Cobb" ];
fhir:Address.state [ fhir:value "Georgia" ];
fhir:Address.postalCode [ fhir:value "30126" ]
], [
fhir:index 1;
fhir:Element.extension [
fhir:index 0;
fhir:Extension.url [ fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/cbs-cdc-address-use" ];
fhir:Extension.valueCoding [
fhir:Coding.system [ fhir:value "http://cbsig.chai.gatech.edu/CodeSystem/cbs-temp-code-system" ];
fhir:Coding.code [ fhir:value "Usual-Residence" ] ] ];
fhir:Address.country [ fhir:value "USA" ]
].
<Condition/HAICA-TC-Condition> a fhir:Condition;
fhir:Resource.id [ fhir:value "HAICA-TC-Condition"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-condition";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-condition> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "extensions" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-Condition\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-us-cbs-condition.html\">US Case Based Surveillance Condition of Interest Profile</a></p></div><p><b>Case Based Surveillance Case Class Status</b>: Confirmed present <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#410605003)</span></p><p><b>category</b>: Problem List Item <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-condition-category.html\">Condition Category Codes</a>#problem-list-item)</span></p><p><b>code</b>: Candida auris, clinical <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (unknown#50263)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAI-CA TC Example Patient)</a></p><p><b>onset</b>: 2018-11-22</p></div>"
];
fhir:DomainResource.extension [
fhir:index 0;
fhir:Extension.url [ fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/cbs-case-class-status" ];
fhir:Extension.valueCodeableConcept [
fhir:CodeableConcept.coding [
fhir:index 0;
a sct:410605003;
fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
fhir:Coding.code [ fhir:value "410605003" ];
fhir:Coding.display [ fhir:value "Confirmed present" ] ] ]
];
fhir:Condition.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/condition-category" ];
fhir:Coding.code [ fhir:value "problem-list-item" ] ]
];
fhir:Condition.code [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "urn:oid:2.16.840.1.114222.4.5.277" ];
fhir:Coding.code [ fhir:value "50263" ];
fhir:Coding.display [ fhir:value "Candida auris, clinical" ] ]
];
fhir:Condition.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ];
fhir:Reference.display [ fhir:value "HAI-CA TC Example Patient" ]
];
fhir:Condition.onsetDateTime [ fhir:value "2018-11-22"^^xsd:date].
<Encounter/HAICA-TC-Hospitalization> a fhir:Encounter;
fhir:Resource.id [ fhir:value "HAICA-TC-Hospitalization"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-hospitalization";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-hospitalization> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-Hospitalization\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-us-cbs-hospitalization.html\">US Case Based Surveillance Hospitalization Encounter Profile</a></p></div><p><b>status</b>: unknown</p><p><b>class</b>: inpatient encounter (Details: http://terminology.hl7.org/CodeSystem/v3-ActCode code IMP = 'inpatient encounter', stated as 'inpatient encounter')</p><p><b>type</b>: Inpatient Hospital <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-CPT.html\">Current Procedural Terminology (CPT®)</a>#42628595)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAI-CA TC Example Patient)</a></p><p><b>period</b>: 2018-11-24 --> (ongoing)</p><p><b>reasonReference</b>: <a href=\"#Condition_HAICA-TC-Condition\">See above (Condition/HAICA-TC-Condition)</a></p><h3>Locations</h3><table class=\"grid\"><tr><td>-</td><td><b>Location</b></td></tr><tr><td>*</td><td><span>: Masked Location</span></td></tr></table></div>"
];
fhir:Encounter.status [ fhir:value "unknown"];
fhir:Encounter.class [
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ActCode" ];
fhir:Coding.code [ fhir:value "IMP" ];
fhir:Coding.display [ fhir:value "inpatient encounter" ]
];
fhir:Encounter.type [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://www.ama-assn.org/go/cpt" ];
fhir:Coding.code [ fhir:value "42628595" ];
fhir:Coding.display [ fhir:value "Inpatient Hospital" ] ]
];
fhir:Encounter.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ];
fhir:Reference.display [ fhir:value "HAI-CA TC Example Patient" ]
];
fhir:Encounter.period [
fhir:Period.start [ fhir:value "2018-11-24"^^xsd:date ]
];
fhir:Encounter.reasonReference [
fhir:index 0;
fhir:Reference.reference [ fhir:value "Condition/HAICA-TC-Condition" ]
];
fhir:Encounter.location [
fhir:index 0;
fhir:Encounter.location.location [
fhir:Element.extension [
fhir:index 0;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/data-absent-reason" ];
fhir:Extension.valueCode [ fhir:value "masked" ] ];
fhir:Reference.display [ fhir:value "Masked Location" ] ]
].
<Organization/HAICA-TC-Reporting-Source> a fhir:Organization;
fhir:Resource.id [ fhir:value "HAICA-TC-Reporting-Source"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-reporting-source-organization";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-reporting-source-organization> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-Reporting-Source\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-us-cbs-reporting-source-organization.html\">US Case Based Surveillance Reporting Source Organization Profile</a></p></div><p><b>active</b>: true</p><p><b>type</b>: Unknown <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v3-NullFlavor.html\">NullFlavor</a>#UNK)</span></p><p><b>name</b>: Reporting Source</p><p><b>telecom</b>: -unknown-</p><p><b>address</b>: </p><h3>Contacts</h3><table class=\"grid\"><tr><td>-</td><td><b>Name</b></td><td><b>Telecom</b></td></tr><tr><td>*</td><td>von Count, Count</td><td><a href=\"mailto:count_voncount@gadph.gov\">count_voncount@gadph.gov</a></td></tr></table></div>"
];
fhir:Organization.active [ fhir:value "true"^^xsd:boolean];
fhir:Organization.type [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-NullFlavor" ];
fhir:Coding.code [ fhir:value "UNK" ];
fhir:Coding.display [ fhir:value "Unknown" ] ]
];
fhir:Organization.name [ fhir:value "Reporting Source"];
fhir:Organization.telecom [
fhir:index 0;
fhir:Element.extension [
fhir:index 0;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/data-absent-reason" ];
fhir:Extension.valueCode [ fhir:value "unknown" ] ]
];
fhir:Organization.address [
fhir:index 0;
fhir:Element.extension [
fhir:index 0;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/data-absent-reason" ];
fhir:Extension.valueCode [ fhir:value "unknown" ] ]
];
fhir:Organization.contact [
fhir:index 0;
fhir:Organization.contact.name [
fhir:HumanName.text [ fhir:value "von Count, Count" ];
fhir:HumanName.family [ fhir:value "von Count" ];
fhir:HumanName.given [
fhir:value "Count";
fhir:index 0 ] ];
fhir:Organization.contact.telecom [
fhir:index 0;
fhir:ContactPoint.system [ fhir:value "email" ];
fhir:ContactPoint.value [ fhir:value "count_voncount@gadph.gov" ] ]
].
<Observation/HAICA-TC-CNP> a fhir:Observation;
fhir:Resource.id [ fhir:value "HAICA-TC-CNP"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/cbs-case-notification-panel";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/cbs-case-notification-panel> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-CNP\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-case-notification-panel.html\">Case Based Surveillance Case Notification Panel Profile</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>hasMember</b>: </p><ul><li><a href=\"#Observation_HAICA-TC-MMWR\">See above (Observation/HAICA-TC-MMWR)</a></li><li><a href=\"#Observation_HAICA-TC-CNP-Member1\">See above (Observation/HAICA-TC-CNP-Member1)</a></li><li><a href=\"#Observation_HAICA-TC-CNP-Member2\">See above (Observation/HAICA-TC-CNP-Member2)</a></li><li><a href=\"#Observation_HAICA-TC-CNP-Member3\">See above (Observation/HAICA-TC-CNP-Member3)</a></li><li><a href=\"#Observation_HAICA-TC-CNP-Member4\">See above (Observation/HAICA-TC-CNP-Member4)</a></li><li><a href=\"#Observation_HAICA-TC-CNP-Member5\">See above (Observation/HAICA-TC-CNP-Member5)</a></li><li><a href=\"#Observation_HAICA-TC-CNP-Member6\">See above (Observation/HAICA-TC-CNP-Member6)</a></li></ul></div>"
];
fhir:Observation.status [ fhir:value "final"];
fhir:Observation.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:78000-7;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "78000-7" ];
fhir:Coding.display [ fhir:value "Case notification panel [CDC.PHIN]" ] ]
];
fhir:Observation.code [
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:78000-7;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "78000-7" ];
fhir:Coding.display [ fhir:value "Case notification panel [CDC.PHIN]" ] ]
];
fhir:Observation.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ];
fhir:Reference.display [ fhir:value "HAICA-TC Example Patient" ]
];
fhir:Observation.hasMember [
fhir:index 0;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-MMWR" ]
], [
fhir:index 1;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-CNP-Member1" ]
], [
fhir:index 2;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-CNP-Member2" ]
], [
fhir:index 3;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-CNP-Member3" ]
], [
fhir:index 4;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-CNP-Member4" ]
], [
fhir:index 5;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-CNP-Member5" ]
], [
fhir:index 6;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-CNP-Member6" ]
].
<Observation/HAICA-TC-MMWR> a fhir:Observation;
fhir:Resource.id [ fhir:value "HAICA-TC-MMWR"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/cbs-mmwr";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/cbs-mmwr> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-MMWR\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-mmwr.html\">Case Based Surveillance Morbidity and Mortality Weekly Report (MMWR) Elements</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: MMWR Week/Year <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"CodeSystem-cbs-temp-code-system.html\">Case Based Surveillance temporary/placeholder code system.</a>#MMWR)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAI-CA TC Example Patient)</a></p><blockquote><p><b>component</b></p><p><b>code</b>: MMWR Week [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77991-8)</span></p><p><b>value</b>: 48</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: MMWR Year [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77992-6)</span></p><p><b>value</b>: 2018</p></blockquote></div>"
];
fhir:Observation.status [ fhir:value "final"];
fhir:Observation.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:78000-7;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "78000-7" ];
fhir:Coding.display [ fhir:value "Case notification panel [CDC.PHIN]" ] ]
];
fhir:Observation.code [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://cbsig.chai.gatech.edu/CodeSystem/cbs-temp-code-system" ];
fhir:Coding.code [ fhir:value "MMWR" ] ]
];
fhir:Observation.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ];
fhir:Reference.display [ fhir:value "HAI-CA TC Example Patient" ]
];
fhir:Observation.component [
fhir:index 0;
fhir:Observation.component.code [
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:77991-8;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "77991-8" ] ] ];
fhir:Observation.component.valueInteger [ fhir:value "48"^^xsd:integer ]
], [
fhir:index 1;
fhir:Observation.component.code [
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:77992-6;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "77992-6" ] ] ];
fhir:Observation.component.valueInteger [ fhir:value "2018"^^xsd:integer ]
].
<Observation/HAICA-TC-CNP-Member1> a fhir:Observation;
fhir:Resource.id [ fhir:value "HAICA-TC-CNP-Member1"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/cbs-reporting-state";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/cbs-reporting-state> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-CNP-Member1\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-reporting-state.html\">Case Based Surveillance Reporting State</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: Reporting State <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77966-0)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: Georgia <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (unknown#13)</span></p></div>"
];
fhir:Observation.status [ fhir:value "final"];
fhir:Observation.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:78000-7;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "78000-7" ];
fhir:Coding.display [ fhir:value "Case notification panel [CDC.PHIN]" ] ]
];
fhir:Observation.code [
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:77966-0;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "77966-0" ];
fhir:Coding.display [ fhir:value "Reporting State" ] ]
];
fhir:Observation.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ];
fhir:Reference.display [ fhir:value "HAICA-TC Example Patient" ]
];
fhir:Observation.valueCodeableConcept [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "urn:oid:2.16.840.1.113883.6.92" ];
fhir:Coding.code [ fhir:value "13" ];
fhir:Coding.display [ fhir:value "Georgia" ] ]
].
<Observation/HAICA-TC-CNP-Member2> a fhir:Observation;
fhir:Resource.id [ fhir:value "HAICA-TC-CNP-Member2"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/cbs-reporting-county";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/cbs-reporting-county> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-CNP-Member2\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-reporting-county.html\">Case Based Surveillance Reporting County</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: Reporting County <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77967-8)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: Cobb <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (unknown#13067)</span></p></div>"
];
fhir:Observation.status [ fhir:value "final"];
fhir:Observation.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:78000-7;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "78000-7" ];
fhir:Coding.display [ fhir:value "Case notification panel [CDC.PHIN]" ] ]
];
fhir:Observation.code [
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:77967-8;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "77967-8" ];
fhir:Coding.display [ fhir:value "Reporting County" ] ]
];
fhir:Observation.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ];
fhir:Reference.display [ fhir:value "HAICA-TC Example Patient" ]
];
fhir:Observation.valueCodeableConcept [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "urn:oid:2.16.840.1.113883.6.93" ];
fhir:Coding.code [ fhir:value "13067" ];
fhir:Coding.display [ fhir:value "Cobb" ] ]
].
<Observation/HAICA-TC-CNP-Member3> a fhir:Observation;
fhir:Resource.id [ fhir:value "HAICA-TC-CNP-Member3"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/cbs-national-reporting-jurisdiction";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/cbs-national-reporting-jurisdiction> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-CNP-Member3\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-national-reporting-jurisdiction.html\">Case Based Surveillance National Reporting Jurisdiction</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: National Reporting Jurisdiction <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77968-6)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: Georgia <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (unknown#13)</span></p></div>"
];
fhir:Observation.status [ fhir:value "final"];
fhir:Observation.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:78000-7;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "78000-7" ];
fhir:Coding.display [ fhir:value "Case notification panel [CDC.PHIN]" ] ]
];
fhir:Observation.code [
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:77968-6;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "77968-6" ];
fhir:Coding.display [ fhir:value "National Reporting Jurisdiction" ] ]
];
fhir:Observation.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ];
fhir:Reference.display [ fhir:value "HAICA-TC Example Patient" ]
];
fhir:Observation.valueCodeableConcept [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "urn:oid:2.16.840.1.113883.6.92" ];
fhir:Coding.code [ fhir:value "13" ];
fhir:Coding.display [ fhir:value "Georgia" ] ]
].
<Observation/HAICA-TC-CNP-Member4> a fhir:Observation;
fhir:Resource.id [ fhir:value "HAICA-TC-CNP-Member4"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/cbs-transmission-mode";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/cbs-transmission-mode> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-CNP-Member4\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-transmission-mode.html\">Case Based Surveillance Transmission Mode</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: Disease transmission mode <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77989-2)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: Indeterminate disease transmission mode <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#418375005)</span></p></div>"
];
fhir:Observation.status [ fhir:value "final"];
fhir:Observation.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:78000-7;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "78000-7" ];
fhir:Coding.display [ fhir:value "Case notification panel [CDC.PHIN]" ] ]
];
fhir:Observation.code [
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:77989-2;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "77989-2" ];
fhir:Coding.display [ fhir:value "Disease transmission mode" ] ]
];
fhir:Observation.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ];
fhir:Reference.display [ fhir:value "HAICA-TC Example Patient" ]
];
fhir:Observation.valueCodeableConcept [
fhir:CodeableConcept.coding [
fhir:index 0;
a sct:418375005;
fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
fhir:Coding.code [ fhir:value "418375005" ];
fhir:Coding.display [ fhir:value "Indeterminate disease transmission mode" ] ]
].
<Observation/HAICA-TC-CNP-Member5> a fhir:Observation;
fhir:Resource.id [ fhir:value "HAICA-TC-CNP-Member5"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/cbs-pregnancy-status";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/cbs-pregnancy-status> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-CNP-Member5\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-pregnancy-status.html\">Case Based Surveillance Pregnancy Status</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: Pregnancy status at time of illness or condition <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77996-7)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: No <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0532.html\">expandedYes-NoIndicator</a>#N)</span></p></div>"
];
fhir:Observation.status [ fhir:value "final"];
fhir:Observation.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:78000-7;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "78000-7" ];
fhir:Coding.display [ fhir:value "Case notification panel [CDC.PHIN]" ] ]
];
fhir:Observation.code [
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:77996-7;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "77996-7" ];
fhir:Coding.display [ fhir:value "Pregnancy status at time of illness or condition" ] ]
];
fhir:Observation.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ];
fhir:Reference.display [ fhir:value "HAICA-TC Example Patient" ]
];
fhir:Observation.valueCodeableConcept [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v2-0532" ];
fhir:Coding.code [ fhir:value "N" ] ]
].
<Observation/HAICA-TC-CNP-Member6> a fhir:Observation;
fhir:Resource.id [ fhir:value "HAICA-TC-CNP-Member6"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/cbs-age-at-investigation";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/cbs-age-at-investigation> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-CNP-Member6\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-age-at-investigation.html\">Case Based Surveillance Age at Case Investigation</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: Age at time of case investigation <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77998-3)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: 78 year<span style=\"background: LightGoldenRodYellow\"> (Details: UCUM code a = 'a')</span></p></div>"
];
fhir:Observation.status [ fhir:value "final"];
fhir:Observation.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:78000-7;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "78000-7" ];
fhir:Coding.display [ fhir:value "Case notification panel [CDC.PHIN]" ] ]
];
fhir:Observation.code [
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:77998-3;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "77998-3" ];
fhir:Coding.display [ fhir:value "Age at time of case investigation" ] ]
];
fhir:Observation.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ];
fhir:Reference.display [ fhir:value "HAICA-TC Example Patient" ]
];
fhir:Observation.valueQuantity [
fhir:Quantity.value [ fhir:value "78"^^xsd:decimal ];
fhir:Quantity.unit [ fhir:value "year" ];
fhir:Quantity.system [ fhir:value "http://unitsofmeasure.org" ];
fhir:Quantity.code [ fhir:value "a" ]
].
<Specimen/HAICA-TC-Specimen> a fhir:Specimen;
fhir:Resource.id [ fhir:value "HAICA-TC-Specimen"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/cbs-specimen";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/cbs-specimen> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-Specimen\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-specimen.html\">Case Based Surveillance Specimen Profile</a></p></div><p><b>identifier</b>: State Lab Specimen ID: IDR908765140, Performing Laboratory Specimen ID: 198374-9</p><p><b>type</b>: Blood specimen <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#119297000)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><h3>Collections</h3><table class=\"grid\"><tr><td>-</td><td><b>Collected[x]</b></td></tr><tr><td>*</td><td>2018-11-24</td></tr></table></div>"
];
fhir:Specimen.identifier [
fhir:index 0;
fhir:Identifier.type [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "urn:oid:2.16.840.1.114222.4.5.232" ];
fhir:Coding.code [ fhir:value "PLT687" ];
fhir:Coding.display [ fhir:value "State Lab Specimen ID" ] ] ];
fhir:Identifier.value [ fhir:value "IDR908765140" ]
], [
fhir:index 1;
fhir:Identifier.type [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "urn:oid:2.16.840.1.114222.4.5.232" ];
fhir:Coding.code [ fhir:value "LAB202" ];
fhir:Coding.display [ fhir:value "Performing Laboratory Specimen ID" ] ] ];
fhir:Identifier.value [ fhir:value "198374-9" ]
];
fhir:Specimen.type [
fhir:CodeableConcept.coding [
fhir:index 0;
a sct:119297000;
fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
fhir:Coding.code [ fhir:value "119297000" ];
fhir:Coding.display [ fhir:value "Blood specimen" ] ]
];
fhir:Specimen.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ];
fhir:Reference.display [ fhir:value "HAICA-TC Example Patient" ]
];
fhir:Specimen.collection [
fhir:Specimen.collection.collectedDateTime [ fhir:value "2018-11-24"^^xsd:date ]
].
<DiagnosticReport/HAICA-TC-Lab-DiagnosticReport> a fhir:DiagnosticReport;
fhir:Resource.id [ fhir:value "HAICA-TC-Lab-DiagnosticReport"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-lab-diagnosticreport";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-lab-diagnosticreport> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-Lab-DiagnosticReport\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-us-cbs-lab-diagnosticreport.html\">US Case Based Surveillance Lab Diagnostic Report</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0074.html\">diagnosticServiceSectionId</a>#LAB)</span></p><p><b>code</b>: Lab test method [Type] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#85069-3)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient)</a></p><p><b>issued</b>: Dec 31, 2020, 7:00:00 PM</p><p><b>specimen</b>: <a href=\"#Specimen_HAICA-TC-Specimen\">See above (Specimen/HAICA-TC-Specimen)</a></p><p><b>result</b>: <a href=\"#Observation_HAICA-TC-Lab-Observation\">See above (Observation/HAICA-TC-Lab-Observation)</a></p></div>"
];
fhir:DiagnosticReport.status [ fhir:value "final"];
fhir:DiagnosticReport.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v2-0074" ];
fhir:Coding.code [ fhir:value "LAB" ] ]
];
fhir:DiagnosticReport.code [
fhir:CodeableConcept.coding [
fhir:index 0;
a loinc:85069-3;
fhir:Coding.system [ fhir:value "http://loinc.org" ];
fhir:Coding.code [ fhir:value "85069-3" ] ]
];
fhir:DiagnosticReport.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ]
];
fhir:DiagnosticReport.issued [ fhir:value "2021-01-01T00:00:00Z"^^xsd:dateTime];
fhir:DiagnosticReport.specimen [
fhir:index 0;
fhir:Reference.reference [ fhir:value "Specimen/HAICA-TC-Specimen" ]
];
fhir:DiagnosticReport.result [
fhir:index 0;
fhir:Reference.reference [ fhir:value "Observation/HAICA-TC-Lab-Observation" ]
].
<Observation/HAICA-TC-Lab-Observation> a fhir:Observation;
fhir:Resource.id [ fhir:value "HAICA-TC-Lab-Observation"];
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-lab-observation";
fhir:index 0;
fhir:link <http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-lab-observation> ]
];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-Lab-Observation\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-us-cbs-lab-observation.html\">US Case Based Surveillance Lab Observation</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-observation-category.html\">Observation Category Codes</a>#laboratory)</span></p><p><b>code</b>: DNA Sequencing <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (unknown#LAB723)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: Positive <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#10828004)</span></p><p><b>method</b>: D1/D2 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#D1D2)</span></p></div>"
];
fhir:Observation.status [ fhir:value "final"];
fhir:Observation.category [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/observation-category" ];
fhir:Coding.code [ fhir:value "laboratory" ] ]
];
fhir:Observation.code [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "urn:oid:2.16.840.1.114222.4.5.232" ];
fhir:Coding.code [ fhir:value "LAB723" ];
fhir:Coding.display [ fhir:value "DNA Sequencing" ] ]
];
fhir:Observation.subject [
fhir:Reference.reference [ fhir:value "Patient/HAICA-TC-Patient" ];
fhir:Reference.display [ fhir:value "HAICA-TC Example Patient" ]
];
fhir:Observation.valueCodeableConcept [
fhir:CodeableConcept.coding [
fhir:index 0;
a sct:10828004;
fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
fhir:Coding.code [ fhir:value "10828004" ];
fhir:Coding.display [ fhir:value "Positive" ] ]
];
fhir:Observation.method [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.code [ fhir:value "D1D2" ];
fhir:Coding.display [ fhir:value "D1/D2" ] ]
].
# - ontology header ------------------------------------------------------------
a owl:Ontology;
owl:imports fhir:fhir.ttl.