Case Based Surveillance Implementation Guide
0.2.1 - ci-build
Case Based Surveillance Implementation Guide - Local Development build (v0.2.1). See the Directory of published versions
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"title" : "Case Based Surveillance Composition",
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"birthDate" : "1940-01-01",
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"valueInteger" : 48
},
{
"code" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "77992-6"
}
]
},
"valueInteger" : 2018
}
]
}
},
{
"fullUrl" : "Observation/HAICA-TC-CNP-Member1",
"resource" : {
"resourceType" : "Observation",
"id" : "HAICA-TC-CNP-Member1",
"meta" : {
"profile" : [
"http://cbsig.chai.gatech.edu/StructureDefinition/cbs-reporting-state"
]
},
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-CNP-Member1\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-reporting-state.html\">Case Based Surveillance Reporting State</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: Reporting State <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77966-0)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: Georgia <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (unknown#13)</span></p></div>"
},
"status" : "final",
"category" : [
{
"coding" : [
{
"system" : "http://loinc.org",
"code" : "78000-7",
"display" : "Case notification panel [CDC.PHIN]"
}
]
}
],
"code" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "77966-0",
"display" : "Reporting State"
}
]
},
"subject" : {
"reference" : "Patient/HAICA-TC-Patient",
"display" : "HAICA-TC Example Patient"
},
"valueCodeableConcept" : {
"coding" : [
{
"system" : "urn:oid:2.16.840.1.113883.6.92",
"code" : "13",
"display" : "Georgia"
}
]
}
}
},
{
"fullUrl" : "Observation/HAICA-TC-CNP-Member2",
"resource" : {
"resourceType" : "Observation",
"id" : "HAICA-TC-CNP-Member2",
"meta" : {
"profile" : [
"http://cbsig.chai.gatech.edu/StructureDefinition/cbs-reporting-county"
]
},
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-CNP-Member2\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-reporting-county.html\">Case Based Surveillance Reporting County</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: Reporting County <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77967-8)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: Cobb <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (unknown#13067)</span></p></div>"
},
"status" : "final",
"category" : [
{
"coding" : [
{
"system" : "http://loinc.org",
"code" : "78000-7",
"display" : "Case notification panel [CDC.PHIN]"
}
]
}
],
"code" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "77967-8",
"display" : "Reporting County"
}
]
},
"subject" : {
"reference" : "Patient/HAICA-TC-Patient",
"display" : "HAICA-TC Example Patient"
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"valueCodeableConcept" : {
"coding" : [
{
"system" : "urn:oid:2.16.840.1.113883.6.93",
"code" : "13067",
"display" : "Cobb"
}
]
}
}
},
{
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"resource" : {
"resourceType" : "Observation",
"id" : "HAICA-TC-CNP-Member3",
"meta" : {
"profile" : [
"http://cbsig.chai.gatech.edu/StructureDefinition/cbs-national-reporting-jurisdiction"
]
},
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-CNP-Member3\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-national-reporting-jurisdiction.html\">Case Based Surveillance National Reporting Jurisdiction</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: National Reporting Jurisdiction <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77968-6)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: Georgia <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (unknown#13)</span></p></div>"
},
"status" : "final",
"category" : [
{
"coding" : [
{
"system" : "http://loinc.org",
"code" : "78000-7",
"display" : "Case notification panel [CDC.PHIN]"
}
]
}
],
"code" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "77968-6",
"display" : "National Reporting Jurisdiction"
}
]
},
"subject" : {
"reference" : "Patient/HAICA-TC-Patient",
"display" : "HAICA-TC Example Patient"
},
"valueCodeableConcept" : {
"coding" : [
{
"system" : "urn:oid:2.16.840.1.113883.6.92",
"code" : "13",
"display" : "Georgia"
}
]
}
}
},
{
"fullUrl" : "Observation/HAICA-TC-CNP-Member4",
"resource" : {
"resourceType" : "Observation",
"id" : "HAICA-TC-CNP-Member4",
"meta" : {
"profile" : [
"http://cbsig.chai.gatech.edu/StructureDefinition/cbs-transmission-mode"
]
},
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-CNP-Member4\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-transmission-mode.html\">Case Based Surveillance Transmission Mode</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: Disease transmission mode <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77989-2)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: Indeterminate disease transmission mode <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#418375005)</span></p></div>"
},
"status" : "final",
"category" : [
{
"coding" : [
{
"system" : "http://loinc.org",
"code" : "78000-7",
"display" : "Case notification panel [CDC.PHIN]"
}
]
}
],
"code" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "77989-2",
"display" : "Disease transmission mode"
}
]
},
"subject" : {
"reference" : "Patient/HAICA-TC-Patient",
"display" : "HAICA-TC Example Patient"
},
"valueCodeableConcept" : {
"coding" : [
{
"system" : "http://snomed.info/sct",
"code" : "418375005",
"display" : "Indeterminate disease transmission mode"
}
]
}
}
},
{
"fullUrl" : "Observation/HAICA-TC-CNP-Member5",
"resource" : {
"resourceType" : "Observation",
"id" : "HAICA-TC-CNP-Member5",
"meta" : {
"profile" : [
"http://cbsig.chai.gatech.edu/StructureDefinition/cbs-pregnancy-status"
]
},
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-CNP-Member5\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-pregnancy-status.html\">Case Based Surveillance Pregnancy Status</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: Pregnancy status at time of illness or condition <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77996-7)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: No <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0532.html\">expandedYes-NoIndicator</a>#N)</span></p></div>"
},
"status" : "final",
"category" : [
{
"coding" : [
{
"system" : "http://loinc.org",
"code" : "78000-7",
"display" : "Case notification panel [CDC.PHIN]"
}
]
}
],
"code" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "77996-7",
"display" : "Pregnancy status at time of illness or condition"
}
]
},
"subject" : {
"reference" : "Patient/HAICA-TC-Patient",
"display" : "HAICA-TC Example Patient"
},
"valueCodeableConcept" : {
"coding" : [
{
"system" : "http://terminology.hl7.org/CodeSystem/v2-0532",
"code" : "N"
}
]
}
}
},
{
"fullUrl" : "Observation/HAICA-TC-CNP-Member6",
"resource" : {
"resourceType" : "Observation",
"id" : "HAICA-TC-CNP-Member6",
"meta" : {
"profile" : [
"http://cbsig.chai.gatech.edu/StructureDefinition/cbs-age-at-investigation"
]
},
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-CNP-Member6\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-age-at-investigation.html\">Case Based Surveillance Age at Case Investigation</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Case notification panel [CDC.PHIN] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#78000-7)</span></p><p><b>code</b>: Age at time of case investigation <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#77998-3)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: 78 year<span style=\"background: LightGoldenRodYellow\"> (Details: UCUM code a = 'a')</span></p></div>"
},
"status" : "final",
"category" : [
{
"coding" : [
{
"system" : "http://loinc.org",
"code" : "78000-7",
"display" : "Case notification panel [CDC.PHIN]"
}
]
}
],
"code" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "77998-3",
"display" : "Age at time of case investigation"
}
]
},
"subject" : {
"reference" : "Patient/HAICA-TC-Patient",
"display" : "HAICA-TC Example Patient"
},
"valueQuantity" : {
"value" : 78,
"unit" : "year",
"system" : "http://unitsofmeasure.org",
"code" : "a"
}
}
},
{
"fullUrl" : "Specimen/HAICA-TC-Specimen",
"resource" : {
"resourceType" : "Specimen",
"id" : "HAICA-TC-Specimen",
"meta" : {
"profile" : [
"http://cbsig.chai.gatech.edu/StructureDefinition/cbs-specimen"
]
},
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-Specimen\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-cbs-specimen.html\">Case Based Surveillance Specimen Profile</a></p></div><p><b>identifier</b>: State Lab Specimen ID: IDR908765140, Performing Laboratory Specimen ID: 198374-9</p><p><b>type</b>: Blood specimen <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#119297000)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><h3>Collections</h3><table class=\"grid\"><tr><td>-</td><td><b>Collected[x]</b></td></tr><tr><td>*</td><td>2018-11-24</td></tr></table></div>"
},
"identifier" : [
{
"type" : {
"coding" : [
{
"system" : "urn:oid:2.16.840.1.114222.4.5.232",
"code" : "PLT687",
"display" : "State Lab Specimen ID"
}
]
},
"value" : "IDR908765140"
},
{
"type" : {
"coding" : [
{
"system" : "urn:oid:2.16.840.1.114222.4.5.232",
"code" : "LAB202",
"display" : "Performing Laboratory Specimen ID"
}
]
},
"value" : "198374-9"
}
],
"type" : {
"coding" : [
{
"system" : "http://snomed.info/sct",
"code" : "119297000",
"display" : "Blood specimen"
}
]
},
"subject" : {
"reference" : "Patient/HAICA-TC-Patient",
"display" : "HAICA-TC Example Patient"
},
"collection" : {
"collectedDateTime" : "2018-11-24"
}
}
},
{
"fullUrl" : "DiagnosticReport/HAICA-TC-Lab-DiagnosticReport",
"resource" : {
"resourceType" : "DiagnosticReport",
"id" : "HAICA-TC-Lab-DiagnosticReport",
"meta" : {
"profile" : [
"http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-lab-diagnosticreport"
]
},
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-Lab-DiagnosticReport\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-us-cbs-lab-diagnosticreport.html\">US Case Based Surveillance Lab Diagnostic Report</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0074.html\">diagnosticServiceSectionId</a>#LAB)</span></p><p><b>code</b>: Lab test method [Type] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#85069-3)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient)</a></p><p><b>issued</b>: Dec 31, 2020, 7:00:00 PM</p><p><b>specimen</b>: <a href=\"#Specimen_HAICA-TC-Specimen\">See above (Specimen/HAICA-TC-Specimen)</a></p><p><b>result</b>: <a href=\"#Observation_HAICA-TC-Lab-Observation\">See above (Observation/HAICA-TC-Lab-Observation)</a></p></div>"
},
"status" : "final",
"category" : [
{
"coding" : [
{
"system" : "http://terminology.hl7.org/CodeSystem/v2-0074",
"code" : "LAB"
}
]
}
],
"code" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "85069-3"
}
]
},
"subject" : {
"reference" : "Patient/HAICA-TC-Patient"
},
"issued" : "2021-01-01T00:00:00Z",
"specimen" : [
{
"reference" : "Specimen/HAICA-TC-Specimen"
}
],
"result" : [
{
"reference" : "Observation/HAICA-TC-Lab-Observation"
}
]
}
},
{
"fullUrl" : "Observation/HAICA-TC-Lab-Observation",
"resource" : {
"resourceType" : "Observation",
"id" : "HAICA-TC-Lab-Observation",
"meta" : {
"profile" : [
"http://cbsig.chai.gatech.edu/StructureDefinition/us-cbs-lab-observation"
]
},
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"HAICA-TC-Lab-Observation\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-us-cbs-lab-observation.html\">US Case Based Surveillance Lab Observation</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-observation-category.html\">Observation Category Codes</a>#laboratory)</span></p><p><b>code</b>: DNA Sequencing <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (unknown#LAB723)</span></p><p><b>subject</b>: <a href=\"#Patient_HAICA-TC-Patient\">See above (Patient/HAICA-TC-Patient: HAICA-TC Example Patient)</a></p><p><b>value</b>: Positive <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#10828004)</span></p><p><b>method</b>: D1/D2 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#D1D2)</span></p></div>"
},
"status" : "final",
"category" : [
{
"coding" : [
{
"system" : "http://terminology.hl7.org/CodeSystem/observation-category",
"code" : "laboratory"
}
]
}
],
"code" : {
"coding" : [
{
"system" : "urn:oid:2.16.840.1.114222.4.5.232",
"code" : "LAB723",
"display" : "DNA Sequencing"
}
]
},
"subject" : {
"reference" : "Patient/HAICA-TC-Patient",
"display" : "HAICA-TC Example Patient"
},
"valueCodeableConcept" : {
"coding" : [
{
"system" : "http://snomed.info/sct",
"code" : "10828004",
"display" : "Positive"
}
]
},
"method" : {
"coding" : [
{
"code" : "D1D2",
"display" : "D1/D2"
}
]
}
}
}
]
}