Case Based Surveillance Implementation Guide
0.2.1 - ci-build
Case Based Surveillance Implementation Guide - Local Development build (v0.2.1). See the Directory of published versions
| Active as of 2022-02-17 |
@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
a fhir:CodeSystem;
fhir:nodeRole fhir:treeRoot;
fhir:Resource.id [ fhir:value "cbs-temp-code-system"];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p>This code system http://cbsig.chai.gatech.edu/CodeSystem/cbs-temp-code-system defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">Usual-Residence<a name=\"cbs-temp-code-system-Usual-Residence\"> </a></td><td>Usual Residence</td><td>Subject's location of usual residence. This is a broader location representation of the LOINC Code 77983-5 (https://loinc.org/77983-5/), 'Country of Usual Residence'. The meaning of 'usual residence' is defined as per surveillance programs.</td></tr><tr><td style=\"white-space:nowrap\">Address-at-Diagnosis<a name=\"cbs-temp-code-system-Address-at-Diagnosis\"> </a></td><td>Address at time of Diagnosis</td><td>Subject's address at the time of the diagnosis for the condition of interest.</td></tr><tr><td style=\"white-space:nowrap\">Location-of-Exposure<a name=\"cbs-temp-code-system-Location-of-Exposure\"> </a></td><td>Location of Exposure</td><td>Location of exposure. (City, County, State/Province, Country)</td></tr><tr><td style=\"white-space:nowrap\">Local-Subject-ID<a name=\"cbs-temp-code-system-Local-Subject-ID\"> </a></td><td>Local Subject ID</td><td>The local ID of the subject/entity</td></tr><tr><td style=\"white-space:nowrap\">Local-Record-ID<a name=\"cbs-temp-code-system-Local-Record-ID\"> </a></td><td>Local Record ID</td><td>Sending system-assigned local ID of the case investigation with which the subject is associated.</td></tr><tr><td style=\"white-space:nowrap\">State-Case-Identifier<a name=\"cbs-temp-code-system-State-Case-Identifier\"> </a></td><td>State Case Identifier</td><td>States use this identifier to link NEDSS investigations back to their own state investigations.</td></tr><tr><td style=\"white-space:nowrap\">Legacy-Case-Identifier<a name=\"cbs-temp-code-system-Legacy-Case-Identifier\"> </a></td><td>Legacy Case Identifier</td><td>CDC uses this identifier to link current case notifications to case notifications submitted by a previous system (NETSS, STD-MIS, etc.).</td></tr><tr><td style=\"white-space:nowrap\">LAB<a name=\"cbs-temp-code-system-LAB\"> </a></td><td>Laboratory</td><td>Laboratory coding for organization type</td></tr><tr><td style=\"white-space:nowrap\">MMWR<a name=\"cbs-temp-code-system-MMWR\"> </a></td><td>MMWR Week/Year</td><td>Grouped MMWR Week and Year into a single code</td></tr><tr><td style=\"white-space:nowrap\">case-outbreak<a name=\"cbs-temp-code-system-case-outbreak\"> </a></td><td>Case Outbreak Name and Indicator</td><td>Grouped case outbreak name and indicator into a single code for the case notification panel</td></tr><tr><td style=\"white-space:nowrap\">epi-questionnaire<a name=\"cbs-temp-code-system-epi-questionnaire\"> </a></td><td>Case Based Surveillance Epi Questionnaire Panel</td><td>Case Based Surveillance Epi Questionnaire Panel defines an observation as part of a series of surveillance program defined questions collecting epidemiological data. This category is common to all potential surveillance programs.</td></tr><tr><td style=\"white-space:nowrap\">std-program-questionnaire-panel<a name=\"cbs-temp-code-system-std-program-questionnaire-panel\"> </a></td><td>STD Program Questionnaire Panel</td><td/></tr><tr><td style=\"white-space:nowrap\">undefined-epi-questionnaire-cannonical-name-code<a name=\"cbs-temp-code-system-undefined-epi-questionnaire-cannonical-name-code\"> </a></td><td>Undefined Epi Questionnaire Cannonical Name code</td><td/></tr><tr><td style=\"white-space:nowrap\">previously-reported<a name=\"cbs-temp-code-system-previously-reported\"> </a></td><td>Previously Reported Case</td><td/></tr><tr><td style=\"white-space:nowrap\">connected-outbreak<a name=\"cbs-temp-code-system-connected-outbreak\"> </a></td><td>Connected Outbreak Case</td><td/></tr><tr><td style=\"white-space:nowrap\">parent-congential-syphilis<a name=\"cbs-temp-code-system-parent-congential-syphilis\"> </a></td><td>Parent in Congenital Syphilis</td><td/></tr><tr><td style=\"white-space:nowrap\">conditionOnsetDateTime<a name=\"cbs-temp-code-system-conditionOnsetDateTime\"> </a></td><td>Condition.onsetDateTime</td><td/></tr><tr><td style=\"white-space:nowrap\">conditionOnsetDatePeriodStart<a name=\"cbs-temp-code-system-conditionOnsetDatePeriodStart\"> </a></td><td>Condition.onsetDatePeriod.start</td><td/></tr><tr><td style=\"white-space:nowrap\">sogi<a name=\"cbs-temp-code-system-sogi\"> </a></td><td>Sexual Orientation and Gender Identity</td><td/></tr><tr><td style=\"white-space:nowrap\">housing-or-residence<a name=\"cbs-temp-code-system-housing-or-residence\"> </a></td><td>Housing Insecurity or Residence Characteristics</td><td/></tr><tr><td style=\"white-space:nowrap\">education<a name=\"cbs-temp-code-system-education\"> </a></td><td>Education Level</td><td/></tr><tr><td style=\"white-space:nowrap\">food-insecurity<a name=\"cbs-temp-code-system-food-insecurity\"> </a></td><td>Food Insecurity</td><td/></tr><tr><td style=\"white-space:nowrap\">condition-of-interest<a name=\"cbs-temp-code-system-condition-of-interest\"> </a></td><td>Condition of Interest/Reportable Condition</td><td/></tr><tr><td style=\"white-space:nowrap\">case-notification-panel<a name=\"cbs-temp-code-system-case-notification-panel\"> </a></td><td>Case Notification Panel</td><td/></tr><tr><td style=\"white-space:nowrap\">reporting-entities<a name=\"cbs-temp-code-system-reporting-entities\"> </a></td><td>Reporting Entities</td><td/></tr><tr><td style=\"white-space:nowrap\">history-of-encounters<a name=\"cbs-temp-code-system-history-of-encounters\"> </a></td><td>History of Encounters (Hospitalizations)</td><td/></tr><tr><td style=\"white-space:nowrap\">epi-observations<a name=\"cbs-temp-code-system-epi-observations\"> </a></td><td>Epi Observations</td><td/></tr><tr><td style=\"white-space:nowrap\">occupational-data<a name=\"cbs-temp-code-system-occupational-data\"> </a></td><td>Occupational Data</td><td/></tr><tr><td style=\"white-space:nowrap\">travel-history<a name=\"cbs-temp-code-system-travel-history\"> </a></td><td>Travel History</td><td/></tr><tr><td style=\"white-space:nowrap\">social-determinants-of-health<a name=\"cbs-temp-code-system-social-determinants-of-health\"> </a></td><td>Social Determinants of Health</td><td/></tr><tr><td style=\"white-space:nowrap\">lab-related<a name=\"cbs-temp-code-system-lab-related\"> </a></td><td>Laboratory Related</td><td/></tr><tr><td style=\"white-space:nowrap\">medication-administered<a name=\"cbs-temp-code-system-medication-administered\"> </a></td><td>Medication Administered</td><td/></tr><tr><td style=\"white-space:nowrap\">vaccinations<a name=\"cbs-temp-code-system-vaccinations\"> </a></td><td>Vaccinations</td><td/></tr><tr><td style=\"white-space:nowrap\">related-persons<a name=\"cbs-temp-code-system-related-persons\"> </a></td><td>Related Persons</td><td/></tr><tr><td style=\"white-space:nowrap\">vital-records<a name=\"cbs-temp-code-system-vital-records\"> </a></td><td>Vital Records Reporting (Death, Birth, or Fetal Death)</td><td/></tr><tr><td style=\"white-space:nowrap\">lab-interpretative-report<a name=\"cbs-temp-code-system-lab-interpretative-report\"> </a></td><td>Lab Interpretive Report</td><td/></tr></table></div>"
];
fhir:CodeSystem.url [ fhir:value "http://cbsig.chai.gatech.edu/CodeSystem/cbs-temp-code-system"];
fhir:CodeSystem.version [ fhir:value "0.2.1"];
fhir:CodeSystem.name [ fhir:value "CBSTemporary"];
fhir:CodeSystem.title [ fhir:value "Case Based Surveillance temporary/placeholder code system."];
fhir:CodeSystem.status [ fhir:value "active"];
fhir:CodeSystem.date [ fhir:value "2022-02-17T15:59:55-05:00"^^xsd:dateTime];
fhir:CodeSystem.publisher [ fhir:value "Georgia Tech Research Institute (GTRI)"];
fhir:CodeSystem.contact [
fhir:index 0;
fhir:ContactDetail.name [ fhir:value "Georgia Tech Research Institute (GTRI)" ];
fhir:ContactDetail.telecom [
fhir:index 0;
fhir:ContactPoint.system [ fhir:value "url" ];
fhir:ContactPoint.value [ fhir:value "http://gtri.gatech.edu/" ] ]
];
fhir:CodeSystem.description [ fhir:value "Code system defined as placeholders for items that are not defined in existing systems."];
fhir:CodeSystem.caseSensitive [ fhir:value "true"^^xsd:boolean];
fhir:CodeSystem.content [ fhir:value "complete"];
fhir:CodeSystem.count [ fhir:value "36"^^xsd:nonNegativeInteger];
fhir:CodeSystem.concept [
fhir:index 0;
fhir:CodeSystem.concept.code [ fhir:value "Usual-Residence" ];
fhir:CodeSystem.concept.display [ fhir:value "Usual Residence" ];
fhir:CodeSystem.concept.definition [ fhir:value "Subject's location of usual residence. This is a broader location representation of the LOINC Code 77983-5 (https://loinc.org/77983-5/), 'Country of Usual Residence'. The meaning of 'usual residence' is defined as per surveillance programs." ]
], [
fhir:index 1;
fhir:CodeSystem.concept.code [ fhir:value "Address-at-Diagnosis" ];
fhir:CodeSystem.concept.display [ fhir:value "Address at time of Diagnosis" ];
fhir:CodeSystem.concept.definition [ fhir:value "Subject's address at the time of the diagnosis for the condition of interest." ]
], [
fhir:index 2;
fhir:CodeSystem.concept.code [ fhir:value "Location-of-Exposure" ];
fhir:CodeSystem.concept.display [ fhir:value "Location of Exposure" ];
fhir:CodeSystem.concept.definition [ fhir:value "Location of exposure. (City, County, State/Province, Country)" ]
], [
fhir:index 3;
fhir:CodeSystem.concept.code [ fhir:value "Local-Subject-ID" ];
fhir:CodeSystem.concept.display [ fhir:value "Local Subject ID" ];
fhir:CodeSystem.concept.definition [ fhir:value "The local ID of the subject/entity" ]
], [
fhir:index 4;
fhir:CodeSystem.concept.code [ fhir:value "Local-Record-ID" ];
fhir:CodeSystem.concept.display [ fhir:value "Local Record ID" ];
fhir:CodeSystem.concept.definition [ fhir:value "Sending system-assigned local ID of the case investigation with which the subject is associated." ]
], [
fhir:index 5;
fhir:CodeSystem.concept.code [ fhir:value "State-Case-Identifier" ];
fhir:CodeSystem.concept.display [ fhir:value "State Case Identifier" ];
fhir:CodeSystem.concept.definition [ fhir:value "States use this identifier to link NEDSS investigations back to their own state investigations." ]
], [
fhir:index 6;
fhir:CodeSystem.concept.code [ fhir:value "Legacy-Case-Identifier" ];
fhir:CodeSystem.concept.display [ fhir:value "Legacy Case Identifier" ];
fhir:CodeSystem.concept.definition [ fhir:value "CDC uses this identifier to link current case notifications to case notifications submitted by a previous system (NETSS, STD-MIS, etc.)." ]
], [
fhir:index 7;
fhir:CodeSystem.concept.code [ fhir:value "LAB" ];
fhir:CodeSystem.concept.display [ fhir:value "Laboratory" ];
fhir:CodeSystem.concept.definition [ fhir:value "Laboratory coding for organization type" ]
], [
fhir:index 8;
fhir:CodeSystem.concept.code [ fhir:value "MMWR" ];
fhir:CodeSystem.concept.display [ fhir:value "MMWR Week/Year" ];
fhir:CodeSystem.concept.definition [ fhir:value "Grouped MMWR Week and Year into a single code" ]
], [
fhir:index 9;
fhir:CodeSystem.concept.code [ fhir:value "case-outbreak" ];
fhir:CodeSystem.concept.display [ fhir:value "Case Outbreak Name and Indicator" ];
fhir:CodeSystem.concept.definition [ fhir:value "Grouped case outbreak name and indicator into a single code for the case notification panel" ]
], [
fhir:index 10;
fhir:CodeSystem.concept.code [ fhir:value "epi-questionnaire" ];
fhir:CodeSystem.concept.display [ fhir:value "Case Based Surveillance Epi Questionnaire Panel" ];
fhir:CodeSystem.concept.definition [ fhir:value "Case Based Surveillance Epi Questionnaire Panel defines an observation as part of a series of surveillance program defined questions collecting epidemiological data. This category is common to all potential surveillance programs." ]
], [
fhir:index 11;
fhir:CodeSystem.concept.code [ fhir:value "std-program-questionnaire-panel" ];
fhir:CodeSystem.concept.display [ fhir:value "STD Program Questionnaire Panel" ]
], [
fhir:index 12;
fhir:CodeSystem.concept.code [ fhir:value "undefined-epi-questionnaire-cannonical-name-code" ];
fhir:CodeSystem.concept.display [ fhir:value "Undefined Epi Questionnaire Cannonical Name code" ]
], [
fhir:index 13;
fhir:CodeSystem.concept.code [ fhir:value "previously-reported" ];
fhir:CodeSystem.concept.display [ fhir:value "Previously Reported Case" ]
], [
fhir:index 14;
fhir:CodeSystem.concept.code [ fhir:value "connected-outbreak" ];
fhir:CodeSystem.concept.display [ fhir:value "Connected Outbreak Case" ]
], [
fhir:index 15;
fhir:CodeSystem.concept.code [ fhir:value "parent-congential-syphilis" ];
fhir:CodeSystem.concept.display [ fhir:value "Parent in Congenital Syphilis" ]
], [
fhir:index 16;
fhir:CodeSystem.concept.code [ fhir:value "conditionOnsetDateTime" ];
fhir:CodeSystem.concept.display [ fhir:value "Condition.onsetDateTime" ]
], [
fhir:index 17;
fhir:CodeSystem.concept.code [ fhir:value "conditionOnsetDatePeriodStart" ];
fhir:CodeSystem.concept.display [ fhir:value "Condition.onsetDatePeriod.start" ]
], [
fhir:index 18;
fhir:CodeSystem.concept.code [ fhir:value "sogi" ];
fhir:CodeSystem.concept.display [ fhir:value "Sexual Orientation and Gender Identity" ]
], [
fhir:index 19;
fhir:CodeSystem.concept.code [ fhir:value "housing-or-residence" ];
fhir:CodeSystem.concept.display [ fhir:value "Housing Insecurity or Residence Characteristics" ]
], [
fhir:index 20;
fhir:CodeSystem.concept.code [ fhir:value "education" ];
fhir:CodeSystem.concept.display [ fhir:value "Education Level" ]
], [
fhir:index 21;
fhir:CodeSystem.concept.code [ fhir:value "food-insecurity" ];
fhir:CodeSystem.concept.display [ fhir:value "Food Insecurity" ]
], [
fhir:index 22;
fhir:CodeSystem.concept.code [ fhir:value "condition-of-interest" ];
fhir:CodeSystem.concept.display [ fhir:value "Condition of Interest/Reportable Condition" ]
], [
fhir:index 23;
fhir:CodeSystem.concept.code [ fhir:value "case-notification-panel" ];
fhir:CodeSystem.concept.display [ fhir:value "Case Notification Panel" ]
], [
fhir:index 24;
fhir:CodeSystem.concept.code [ fhir:value "reporting-entities" ];
fhir:CodeSystem.concept.display [ fhir:value "Reporting Entities" ]
], [
fhir:index 25;
fhir:CodeSystem.concept.code [ fhir:value "history-of-encounters" ];
fhir:CodeSystem.concept.display [ fhir:value "History of Encounters (Hospitalizations)" ]
], [
fhir:index 26;
fhir:CodeSystem.concept.code [ fhir:value "epi-observations" ];
fhir:CodeSystem.concept.display [ fhir:value "Epi Observations" ]
], [
fhir:index 27;
fhir:CodeSystem.concept.code [ fhir:value "occupational-data" ];
fhir:CodeSystem.concept.display [ fhir:value "Occupational Data" ]
], [
fhir:index 28;
fhir:CodeSystem.concept.code [ fhir:value "travel-history" ];
fhir:CodeSystem.concept.display [ fhir:value "Travel History" ]
], [
fhir:index 29;
fhir:CodeSystem.concept.code [ fhir:value "social-determinants-of-health" ];
fhir:CodeSystem.concept.display [ fhir:value "Social Determinants of Health" ]
], [
fhir:index 30;
fhir:CodeSystem.concept.code [ fhir:value "lab-related" ];
fhir:CodeSystem.concept.display [ fhir:value "Laboratory Related" ]
], [
fhir:index 31;
fhir:CodeSystem.concept.code [ fhir:value "medication-administered" ];
fhir:CodeSystem.concept.display [ fhir:value "Medication Administered" ]
], [
fhir:index 32;
fhir:CodeSystem.concept.code [ fhir:value "vaccinations" ];
fhir:CodeSystem.concept.display [ fhir:value "Vaccinations" ]
], [
fhir:index 33;
fhir:CodeSystem.concept.code [ fhir:value "related-persons" ];
fhir:CodeSystem.concept.display [ fhir:value "Related Persons" ]
], [
fhir:index 34;
fhir:CodeSystem.concept.code [ fhir:value "vital-records" ];
fhir:CodeSystem.concept.display [ fhir:value "Vital Records Reporting (Death, Birth, or Fetal Death)" ]
], [
fhir:index 35;
fhir:CodeSystem.concept.code [ fhir:value "lab-interpretative-report" ];
fhir:CodeSystem.concept.display [ fhir:value "Lab Interpretive Report" ]
].
# - ontology header ------------------------------------------------------------
a owl:Ontology;
owl:imports fhir:fhir.ttl.