Case Based Surveillance Implementation Guide
0.2.1 - ci-build
Case Based Surveillance Implementation Guide - Local Development build (v0.2.1). See the Directory of published versions
| Active as of 2022-02-17 |
{
"resourceType" : "CodeSystem",
"id" : "cbs-temp-code-system",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p>This code system http://cbsig.chai.gatech.edu/CodeSystem/cbs-temp-code-system defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">Usual-Residence<a name=\"cbs-temp-code-system-Usual-Residence\"> </a></td><td>Usual Residence</td><td>Subject's location of usual residence. This is a broader location representation of the LOINC Code 77983-5 (https://loinc.org/77983-5/), 'Country of Usual Residence'. The meaning of 'usual residence' is defined as per surveillance programs.</td></tr><tr><td style=\"white-space:nowrap\">Address-at-Diagnosis<a name=\"cbs-temp-code-system-Address-at-Diagnosis\"> </a></td><td>Address at time of Diagnosis</td><td>Subject's address at the time of the diagnosis for the condition of interest.</td></tr><tr><td style=\"white-space:nowrap\">Location-of-Exposure<a name=\"cbs-temp-code-system-Location-of-Exposure\"> </a></td><td>Location of Exposure</td><td>Location of exposure. (City, County, State/Province, Country)</td></tr><tr><td style=\"white-space:nowrap\">Local-Subject-ID<a name=\"cbs-temp-code-system-Local-Subject-ID\"> </a></td><td>Local Subject ID</td><td>The local ID of the subject/entity</td></tr><tr><td style=\"white-space:nowrap\">Local-Record-ID<a name=\"cbs-temp-code-system-Local-Record-ID\"> </a></td><td>Local Record ID</td><td>Sending system-assigned local ID of the case investigation with which the subject is associated.</td></tr><tr><td style=\"white-space:nowrap\">State-Case-Identifier<a name=\"cbs-temp-code-system-State-Case-Identifier\"> </a></td><td>State Case Identifier</td><td>States use this identifier to link NEDSS investigations back to their own state investigations.</td></tr><tr><td style=\"white-space:nowrap\">Legacy-Case-Identifier<a name=\"cbs-temp-code-system-Legacy-Case-Identifier\"> </a></td><td>Legacy Case Identifier</td><td>CDC uses this identifier to link current case notifications to case notifications submitted by a previous system (NETSS, STD-MIS, etc.).</td></tr><tr><td style=\"white-space:nowrap\">LAB<a name=\"cbs-temp-code-system-LAB\"> </a></td><td>Laboratory</td><td>Laboratory coding for organization type</td></tr><tr><td style=\"white-space:nowrap\">MMWR<a name=\"cbs-temp-code-system-MMWR\"> </a></td><td>MMWR Week/Year</td><td>Grouped MMWR Week and Year into a single code</td></tr><tr><td style=\"white-space:nowrap\">case-outbreak<a name=\"cbs-temp-code-system-case-outbreak\"> </a></td><td>Case Outbreak Name and Indicator</td><td>Grouped case outbreak name and indicator into a single code for the case notification panel</td></tr><tr><td style=\"white-space:nowrap\">epi-questionnaire<a name=\"cbs-temp-code-system-epi-questionnaire\"> </a></td><td>Case Based Surveillance Epi Questionnaire Panel</td><td>Case Based Surveillance Epi Questionnaire Panel defines an observation as part of a series of surveillance program defined questions collecting epidemiological data. This category is common to all potential surveillance programs.</td></tr><tr><td style=\"white-space:nowrap\">std-program-questionnaire-panel<a name=\"cbs-temp-code-system-std-program-questionnaire-panel\"> </a></td><td>STD Program Questionnaire Panel</td><td/></tr><tr><td style=\"white-space:nowrap\">undefined-epi-questionnaire-cannonical-name-code<a name=\"cbs-temp-code-system-undefined-epi-questionnaire-cannonical-name-code\"> </a></td><td>Undefined Epi Questionnaire Cannonical Name code</td><td/></tr><tr><td style=\"white-space:nowrap\">previously-reported<a name=\"cbs-temp-code-system-previously-reported\"> </a></td><td>Previously Reported Case</td><td/></tr><tr><td style=\"white-space:nowrap\">connected-outbreak<a name=\"cbs-temp-code-system-connected-outbreak\"> </a></td><td>Connected Outbreak Case</td><td/></tr><tr><td style=\"white-space:nowrap\">parent-congential-syphilis<a name=\"cbs-temp-code-system-parent-congential-syphilis\"> </a></td><td>Parent in Congenital Syphilis</td><td/></tr><tr><td style=\"white-space:nowrap\">conditionOnsetDateTime<a name=\"cbs-temp-code-system-conditionOnsetDateTime\"> </a></td><td>Condition.onsetDateTime</td><td/></tr><tr><td style=\"white-space:nowrap\">conditionOnsetDatePeriodStart<a name=\"cbs-temp-code-system-conditionOnsetDatePeriodStart\"> </a></td><td>Condition.onsetDatePeriod.start</td><td/></tr><tr><td style=\"white-space:nowrap\">sogi<a name=\"cbs-temp-code-system-sogi\"> </a></td><td>Sexual Orientation and Gender Identity</td><td/></tr><tr><td style=\"white-space:nowrap\">housing-or-residence<a name=\"cbs-temp-code-system-housing-or-residence\"> </a></td><td>Housing Insecurity or Residence Characteristics</td><td/></tr><tr><td style=\"white-space:nowrap\">education<a name=\"cbs-temp-code-system-education\"> </a></td><td>Education Level</td><td/></tr><tr><td style=\"white-space:nowrap\">food-insecurity<a name=\"cbs-temp-code-system-food-insecurity\"> </a></td><td>Food Insecurity</td><td/></tr><tr><td style=\"white-space:nowrap\">condition-of-interest<a name=\"cbs-temp-code-system-condition-of-interest\"> </a></td><td>Condition of Interest/Reportable Condition</td><td/></tr><tr><td style=\"white-space:nowrap\">case-notification-panel<a name=\"cbs-temp-code-system-case-notification-panel\"> </a></td><td>Case Notification Panel</td><td/></tr><tr><td style=\"white-space:nowrap\">reporting-entities<a name=\"cbs-temp-code-system-reporting-entities\"> </a></td><td>Reporting Entities</td><td/></tr><tr><td style=\"white-space:nowrap\">history-of-encounters<a name=\"cbs-temp-code-system-history-of-encounters\"> </a></td><td>History of Encounters (Hospitalizations)</td><td/></tr><tr><td style=\"white-space:nowrap\">epi-observations<a name=\"cbs-temp-code-system-epi-observations\"> </a></td><td>Epi Observations</td><td/></tr><tr><td style=\"white-space:nowrap\">occupational-data<a name=\"cbs-temp-code-system-occupational-data\"> </a></td><td>Occupational Data</td><td/></tr><tr><td style=\"white-space:nowrap\">travel-history<a name=\"cbs-temp-code-system-travel-history\"> </a></td><td>Travel History</td><td/></tr><tr><td style=\"white-space:nowrap\">social-determinants-of-health<a name=\"cbs-temp-code-system-social-determinants-of-health\"> </a></td><td>Social Determinants of Health</td><td/></tr><tr><td style=\"white-space:nowrap\">lab-related<a name=\"cbs-temp-code-system-lab-related\"> </a></td><td>Laboratory Related</td><td/></tr><tr><td style=\"white-space:nowrap\">medication-administered<a name=\"cbs-temp-code-system-medication-administered\"> </a></td><td>Medication Administered</td><td/></tr><tr><td style=\"white-space:nowrap\">vaccinations<a name=\"cbs-temp-code-system-vaccinations\"> </a></td><td>Vaccinations</td><td/></tr><tr><td style=\"white-space:nowrap\">related-persons<a name=\"cbs-temp-code-system-related-persons\"> </a></td><td>Related Persons</td><td/></tr><tr><td style=\"white-space:nowrap\">vital-records<a name=\"cbs-temp-code-system-vital-records\"> </a></td><td>Vital Records Reporting (Death, Birth, or Fetal Death)</td><td/></tr><tr><td style=\"white-space:nowrap\">lab-interpretative-report<a name=\"cbs-temp-code-system-lab-interpretative-report\"> </a></td><td>Lab Interpretive Report</td><td/></tr></table></div>"
},
"url" : "http://cbsig.chai.gatech.edu/CodeSystem/cbs-temp-code-system",
"version" : "0.2.1",
"name" : "CBSTemporary",
"title" : "Case Based Surveillance temporary/placeholder code system.",
"status" : "active",
"date" : "2022-02-17T15:59:55-05:00",
"publisher" : "Georgia Tech Research Institute (GTRI)",
"contact" : [
{
"name" : "Georgia Tech Research Institute (GTRI)",
"telecom" : [
{
"system" : "url",
"value" : "http://gtri.gatech.edu/"
}
]
}
],
"description" : "Code system defined as placeholders for items that are not defined in existing systems.",
"caseSensitive" : true,
"content" : "complete",
"count" : 36,
"concept" : [
{
"code" : "Usual-Residence",
"display" : "Usual Residence",
"definition" : "Subject's location of usual residence. This is a broader location representation of the LOINC Code 77983-5 (https://loinc.org/77983-5/), 'Country of Usual Residence'. The meaning of 'usual residence' is defined as per surveillance programs."
},
{
"code" : "Address-at-Diagnosis",
"display" : "Address at time of Diagnosis",
"definition" : "Subject's address at the time of the diagnosis for the condition of interest."
},
{
"code" : "Location-of-Exposure",
"display" : "Location of Exposure",
"definition" : "Location of exposure. (City, County, State/Province, Country)"
},
{
"code" : "Local-Subject-ID",
"display" : "Local Subject ID",
"definition" : "The local ID of the subject/entity"
},
{
"code" : "Local-Record-ID",
"display" : "Local Record ID",
"definition" : "Sending system-assigned local ID of the case investigation with which the subject is associated."
},
{
"code" : "State-Case-Identifier",
"display" : "State Case Identifier",
"definition" : "States use this identifier to link NEDSS investigations back to their own state investigations."
},
{
"code" : "Legacy-Case-Identifier",
"display" : "Legacy Case Identifier",
"definition" : "CDC uses this identifier to link current case notifications to case notifications submitted by a previous system (NETSS, STD-MIS, etc.)."
},
{
"code" : "LAB",
"display" : "Laboratory",
"definition" : "Laboratory coding for organization type"
},
{
"code" : "MMWR",
"display" : "MMWR Week/Year",
"definition" : "Grouped MMWR Week and Year into a single code"
},
{
"code" : "case-outbreak",
"display" : "Case Outbreak Name and Indicator",
"definition" : "Grouped case outbreak name and indicator into a single code for the case notification panel"
},
{
"code" : "epi-questionnaire",
"display" : "Case Based Surveillance Epi Questionnaire Panel",
"definition" : "Case Based Surveillance Epi Questionnaire Panel defines an observation as part of a series of surveillance program defined questions collecting epidemiological data. This category is common to all potential surveillance programs."
},
{
"code" : "std-program-questionnaire-panel",
"display" : "STD Program Questionnaire Panel"
},
{
"code" : "undefined-epi-questionnaire-cannonical-name-code",
"display" : "Undefined Epi Questionnaire Cannonical Name code"
},
{
"code" : "previously-reported",
"display" : "Previously Reported Case"
},
{
"code" : "connected-outbreak",
"display" : "Connected Outbreak Case"
},
{
"code" : "parent-congential-syphilis",
"display" : "Parent in Congenital Syphilis"
},
{
"code" : "conditionOnsetDateTime",
"display" : "Condition.onsetDateTime"
},
{
"code" : "conditionOnsetDatePeriodStart",
"display" : "Condition.onsetDatePeriod.start"
},
{
"code" : "sogi",
"display" : "Sexual Orientation and Gender Identity"
},
{
"code" : "housing-or-residence",
"display" : "Housing Insecurity or Residence Characteristics"
},
{
"code" : "education",
"display" : "Education Level"
},
{
"code" : "food-insecurity",
"display" : "Food Insecurity"
},
{
"code" : "condition-of-interest",
"display" : "Condition of Interest/Reportable Condition"
},
{
"code" : "case-notification-panel",
"display" : "Case Notification Panel"
},
{
"code" : "reporting-entities",
"display" : "Reporting Entities"
},
{
"code" : "history-of-encounters",
"display" : "History of Encounters (Hospitalizations)"
},
{
"code" : "epi-observations",
"display" : "Epi Observations"
},
{
"code" : "occupational-data",
"display" : "Occupational Data"
},
{
"code" : "travel-history",
"display" : "Travel History"
},
{
"code" : "social-determinants-of-health",
"display" : "Social Determinants of Health"
},
{
"code" : "lab-related",
"display" : "Laboratory Related"
},
{
"code" : "medication-administered",
"display" : "Medication Administered"
},
{
"code" : "vaccinations",
"display" : "Vaccinations"
},
{
"code" : "related-persons",
"display" : "Related Persons"
},
{
"code" : "vital-records",
"display" : "Vital Records Reporting (Death, Birth, or Fetal Death)"
},
{
"code" : "lab-interpretative-report",
"display" : "Lab Interpretive Report"
}
]
}